71. Simões RV, Neto Henriques R, Cardoso BM, Fernandes FF, Carvalho T, Shemesh N. (2022) Glucose fluxes in glycolytic and oxidative pathways detected in vivo by deuterium magnetic resonance spectroscopy reflect proliferation in mouse glioblastoma. NeuroImage Clin 33, 102932 (doi:10.1016/j.nicl.2021.102932[PDF]

70. Alves R, Neto Henriques R, Kerkelä L, Chavarrías C, Jespersen SN, Shemesh N. (2022) Correlation Tensor MRI decifers underlying kurtosis sources in stroke. NeuroImage 247, 118833 (doi:10.1016/j.neuroimage.2021.118833[PDF]

69. Grimm C, Frässle S, Steger C, von Ziegler L, Sturman O, Shemesh N, Peleg-Raibstein D, Burdakov D, Bohacek J, Enno Stephan K, Razansky D, Wenderoth N, Zerbi V. (2021) Optogenetic activation of striatal D1R and S2R cells differentially engages downstream connected areas beyond the basal ganglia. Cell Rep 37 (13), 110161 (doi:10.1016/j.celrep.2021.110161[PDF]

68. Neto Henriques R, Jespersen SN, Shemesh N. (2021) Evidence for microscopic kurtosis in neural tissue revealed by correlation tensor MRI. Magn Reson Med 86 (6), 3111-3130 (doi:10.1002/mrm.28938[PDF]

67. De Luca A, Ianuş A, Leemans A, Palombo M, Shemesh N, Zhang H, Alexander DC, Nilsson M, Froeling M, Biessels GJ, Zucchelli M, Frigo M, Albay E, Sedlar S, Alimi A, Deslauriers-Gauthier S, Deriche R, Fick R, Afzali M, Pieciak T, Bogusz F, Aja-Fernández S, Özarslan E, Jones DK, Chen H, Jin M, Zhang Z, Wang F, Nath V, Parvathaneni P, Morez J, Sijbers J, Jeurissen B, Fadnavis S, Endres S, Rokem A, Garyfallidis E, Sanchez I, Prchkovska V, Rodrigues P, Landman BA, Schilling KG. (2021) On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types: chronicles of the MEMENTO challenge. NeuroImage 240, 118367 (doi:10.1016/j.neuroimage.2021.118367[PDF]

66. Bilreiro C, Fernandes FF, Andrade L, Chavarrías C, Simões RV, Matos C, Shemesh N. (2021) Effective bowel motion reduction in mouse abdominal MRI using hyoscine butylbromide. Magn Reson Med 86 (4), 2146-2155 (doi:10.1002/mrm.28824[PDF]

65. Ligneul C, Fernandes FF, Shemesh N. (2021) High temporal resolution functional Magnetic Resonance Spectroscopy in the mouse upon visual stimulation. NeuroImage 234, 117973 (doi:10.1016/j.neuroimage.2021.117973[PDF]

64. Nunes D, Gil R, Shemesh N. (2021) A rapid-onset diffusion functional MRI signal reflects neuromorphological coupling dynamics. NeuroImage 231, 117862 (doi:10.1016/j.neuroimage.2021.117862[PDF]

63. Olesen JL, Østergaard L, Shemesh N, Jespersen SN. (2021) Beyond the diffusion standard model in fixed rat spinal cord with combined linear and planar encoding. NeuroImage 231, 117849 (doi:10.1016/j.neuroimage.2021.117849[PDF]

62. Neto Henriques R, Palombo M, Jespersen SN, Shemesh N, Lundell H, Ianuş A. (2021) Double diffusion encoding and applications for biomedical imaging. J Neurosci Methods 348, 108989 (doi:10.1016/j.jneumeth.2020.108989[PDF]

61. Gil R, Fernandes FF, Shemesh N. (2021) Neuroplasticity-driven timing modulations revealed by ultrafast functional magnetic resonance imaging. NeuroImage 225, 117446 (doi:10.1016/j.neuroimage.2020.117446[PDF]

60. Yon M, Bao Q, Jacqueline Chitrit O, Neto Henriques R, Shemesh N, Frydman L. (2020) High-resolution 3D in vivo brain diffusion tensor imaging at ultrahigh fields: following maturation on juvenile and adult mice. Front Neurosci 14, 590900 (doi:10.3389/fnis.2020.590900[PDF]

59. Palombo M, Ianuş A, Guerreri M, Nunes D, Alexander DC, Shemesh N, Zhang H. (2020) SANDI: a compartment-based model for non-invasive apparent soma and neurite imaging by diffusion MRI. NeuroImage 215, 116835 (doi:10.1016/j.neuroimage.2020.116835) [PDF]

58. Ianuş A, Santiago I, Galzerano A, Montesinos P, Loução N, Sanchez-Gonzalez J, Alexander DC, Matos C, Shemesh N. (2020) Higher‐order diffusion MRI characterization of mesorectal lymph nodes in rectal cancer. Magn Reson Med 84 (1), 348-364 (doi:10.1002/mrm.28102) [PDF]

57. Neto Henriques R, Jespersen SN, Shemesh N. (2020) Correlation tensor magnetic resonance imaging. NeuroImage 211, 116605 (doi:10.1016/j.neuroimage.2020.116605) [PDF]

56. Kerkelä L, Neto Henriques R, Hall MG, Clark CA, Shemesh N. (2020) Validation and noise robustness assessment of microscopic anisotropy estimation with clinically feasible double diffusion encoding MRI. Magn Reson Med 83 (5), 1698-1710 (doi:10.1002/mrm.28048) [PDF]

55. Chuhutin A, Hansen B, Wlodarczyk A, Owens T, Shemesh N, Jespersen SN. (2020) Diffusion Kurtosis Imaging maps neural damage in the EAE model of multiple sclerosis. NeuroImage 208, 116406 (doi:10.1016/j.neuroimage.2019.116406) [PDF]

54. Veraart J, Nunes D, Rudrapatna U, Fieremans E, Jones DK, Novikov DS, Shemesh N. (2020) Noninvasive quantification of axon radii using diffusion MRI. eLife 9:e49855 (doi:10.7554/eLife.49855) [PDF]

53. Gonçalves SI, Ligneul C, Shemesh N. (2019) Short echo time relaxation‐enhanced MR spectroscopy reveals broad downfield resonances. Magn Reson Med 82 (4), 1266-1277 (doi:10.1002/mrm.27806) [PDF]

52. Does MD, Olesen JL, Harkins KD, Serradas Duarte T, Gochberg DF, Jespersen SN, Shemesh N. (2019) Evaluation of principal component analysis image denoising on multi-exponential MRI relaxometry. Magn Reson Med 81 (6), 3503-3514 (doi:10.1002/mrm.27658) [PDF]

51. Neto Henriques R, Jespersen SN, Shemesh N. (2019) Microscopic anisotropy misestimation in spherical‐mean single diffusion encoding MRI. Magn Reson Med 81 (5), 3245-3261 (doi:10.1002/mrm.27606) [PDF]

50. Santiago I, Santinha J, Ianuş A, Galzerano A, Theias R, Maia J, Barata MJ, Loução N, Costa-Silva B, Beltran A, Matos C, Shemesh N. (2019) Susceptibility perturbation MRI maps tumor infiltration into mesorectal lymph nodes. Cancer Res 79 (9), 2435-2444 (doi:10.1158/0008-5472.CAN-18-3682) [PDF]

49. Jespersen SN, Olesen JL, Ianuş A, Shemesh N. (2019) Effects of nongaussian diffusion on “isotropic diffusion” measurements: An ex-vivo microimaging and simulation study. J Magn Reson 300, 84-94 (doi:10.1016/j.jmr.2019.01.007) [PDF]

48. Nunes D, Ianuş A, Shemesh N. (2019) Layer-specific connectivity revealed by diffusion-weighted functional MRI in the rat thalamocortical pathway. NeuroImage 184, 646-657 (doi:10.1016/j.neuroimage.2018.09.050) [PDF]

47. Ianuş A, Jespersen SN, Serradas Duarte T, Alexander DC, Drobnjak I, Shemesh N. (2018) Accurate estimation of microscopic diffusion anisotropy and its time dependence in the mouse brain. NeuroImage 183, 934-949 (doi:10.1016/j.neuroimage.2018.08.034) [PDF]

46. Jespersen SN, Olesen JL, Hansen B, Shemesh N. (2018) Diffusion time dependence of microstructural parameters in fixed spinal cord. NeuroImage 182, 329-342 (doi:10.1016/j.neuroimage.2017.08.039) [PDF]

45. Palombo M, Shemesh N, Ronen I, Valette J. (2018) Insights into brain microstructure from in vivo DW-MRS. NeuroImage 182, 97-116 (doi:10.1016/j.neuroimage.2017.11.028) [PDF]

44. Serradas Duarte T, Shemesh N. (2018) Two-dimensional magnetization-transfer – CPMG MRI reveals tract-specific signatures in fixed rat spinal cord. J Magn Reson 297, 124-137 (doi:10.1016/j.jmr.2018.10.014) [PDF]

43. Shemesh N. (2018) Axon Diameters and Myelin Content Modulate Microscopic Fractional Anisotropy at Short Diffusion Times in Fixed Rat Spinal Cord. Front Phys 6, 49 (doi:10.3389/fphy.2018.00049) [PDF]

42. Ianuş A, Shemesh N. (2018) Incomplete initial nutation diffusion imaging: An ultrafast, single-scan approach for diffusion mapping. Magn Reson Med 79 (4), 2198-2204 (doi:10.1002/mrm.26894) [PDF]

41. Blazquez Freches G, Chavarrías C, Shemesh N. (2018) BOLD-fMRI in the mouse auditory pathway. NeuroImage 165, 265-277 (doi:10.1016/j.neuroimage.2017.10.027) [PDF]

40. Shemesh N, Rosenberg JT, Dumez JN, Grant SC, Frydman L. (2017) Distinguishing neuronal from astrocytic subcellular microstructures using in vivo Double Diffusion Encoded 1H MRS at 21.1 T. PLoS ONE 12 (10), e0185232 (doi:10.1371/journal.pone.0185232) [PDF]

39. Hansen B, Khan AR, Shemesh N, Lund TE, Sangill R, Eskildsen SF, Østergaard L, Jespersen SN. (2017) White matter biomarkers from fast protocols using axially symmetric diffusion kurtosis imaging. NMR Biomed 30 (9), e3741 (doi:10.1002/nbm.3741) [PDF]

38. Ianuş A, Shemesh N, Alexander DC, Drobnjak I. (2017) Double oscillating diffusion encoding and sensitivity to microscopic anisotropy. Magn Reson Med 78 (2), 550-564 (doi:10.1002/mrm.26393) [PDF]

37. Álvarez GA, Shemesh N, Frydman L. (2017) Internal gradient distributions: A susceptibility-derived tensor delivering morphologies by magnetic resonance. Sci Rep 7 (1), 3311 (doi:10.1038/s41598-017-03277-9) [PDF]

36. Nunes D, Cruz TL, Jespersen SN, Shemesh N. (2017) Mapping axonal density and average diameter using non-monotonic time-dependent gradient-echo MRI. J Magn Reson 277, 117-130 (doi:10.1016/j.jmr.2017.02.017) [PDF]

35. Rosenberg JT, Shemesh N, Muniz JA, Dumez JN, Frydman L, Grant SC. (2017) Transverse relaxation of selectively excited metabolites in stroke at 21.1 T. Magn Reson Med 77 (2), 520-528 (doi:10.1002/mrm.26132) [PDF]

34. Zhang Z, Shemesh N, Frydman L. (2017) Efficient spectroscopic imaging by an optimized encoding of pretargeted resonances. Magn Reson Med 77 (2), 511-519 (doi:10.1002/mrm.26161) [PDF]

33. Hansen B, Shemesh N, Jespersen SN. (2016) Fast imaging of mean, axial and radial diffusion kurtosis. NeuroImage 142, 381-393 (doi:10.1016/j.neuroimage.2016.08.022) [PDF]

32. Shemesh N, Jespersen SN, Alexander DC, Cohen Y, Drobnjak I, Dyrby TB, Finsterbusch J, Koch MA, Kuder T, Laun F, Lawrenz M, Lundell H, Mitra PP, Nilsson M, Özarslan E, Topgaard D, Westin CF. (2016) Conventions and nomenclature for double diffusion encoding NMR and MRI. Magn Reson Med 75 (1), 82-87 (doi:10.1002/mrm.25901) [PDF]

31. Shemesh N, Álvarez GA, Frydman L (2015) Size Distribution Imaging by Non-Uniform Oscillating-Gradient Spin Echo (NOGSE) MRI. PLoS ONE 10 (7), e0133201 (doi:10.1371/journal.pone.0133201)

30. Shemesh N, Rosenberg JT, Dumez JN, Grant SC, Frydman L. (2014) Metabolic T1 dynamics and longitudinal relaxation enhancement in vivo at ultrahigh magnetic fields on ischemia. J Cereb Blood Flow Metab 34 (11), 1810-1817 (doi:10.1038/jcbfm.2014.149)

29. Shemesh N, Rosenberg JT, Dumez JN, Muniz JA, Grant SC, Frydman L. (2014) Metabolic properties in stroked rats revealed by relaxation-enhanced magnetic resonance spectroscopy at ultrahigh fields. Nat Commun 5, 4958 (doi:10.1038/ncomms5958)

28. Álvarez GA, Shemesh N, Frydman L. (2014) Diffusion-assisted selective dynamical recoupling: A new approach to measure background gradients in magnetic resonance. J Chem Phys 140 (8), 084205 (doi:10.1063/1.4865335)

27. Shemesh N, Álvarez GA, Frydman L. (2013) Measuring small compartment dimensions by probing diffusion dynamics via Non-uniform Oscillating-Gradient Spin-Echo (NOGSE) NMR. J Magn Reson 237, 49–62 (doi:10.1016/j.jmr.2013.09.009)

26. Assaf Y, Alexander DC, Jones DK, Bizzi A, Behrens TE, Clark CA, Cohen Y, Dyrby TB, Huppi PS, Knoesche TR, LeBihan D, Parker GJ, Poupon C, CONNECT consortium. (2013) The CONNECT project: Combining macro- and micro-structure. NeuroImage 80, 273–282 (doi:10.1016/j.neuroimage.2013.05.055)

25. Shemesh N, Dumez JN, Frydman L. (2013) Longitudinal relaxation enhancement in 1HNMR of tissue metabolites via spectrally-selective excitation. Chemistry 19 (39), 13002-13008 (doi:10.1002/chem.201300955)

24. Álvarez GA, Shemesh N, Frydman L. (2013) Coherent Dynamical Recoupling of Diffusion-Driven Decoherence in Magnetic Resonance. Phys Rev Lett 111 (8), 080404 (doi:10.1103/PhysRevLett.111.080404)

23. Solomon E, Shemesh N, Frydman L. (2013) Diffusion weighted MRI by spatiotemporal encoding: analytical description and in vivo validations. J Magn Reson 232, 76–86 (doi:10.1016/j.jmr.2013.02.014)

22. Shemesh N, Barazany D, Sadan O, Bar L, Zur Y, Barhum Y, Sochen N, Offen D, Assaf Y, Cohen Y. (2012) Mapping apparent eccentricity and residual ensemble anisotropy in the gray matter using angular double-pulsed-field-gradient MRI. Magn Reson Med 68 (3), 794–806 (doi:10.1002/mrm.24490)

21. Sadan O, Shemesh N, Barzilay R, Dadon-Nahum M, Blumenfeld-Katzir T, Assaf Y, Yeshurun M, Djaldetti R, Cohen Y, Melamed E, Offen D. (2012) Mesenchymal stem cells induced to secrete neurotrophic factors attenuate quinolinic acid toxicity: a potential therapy for Huntington’s disease. Exp Neurol 234 (2), 417–427 (doi:10.1016/j.expneurol.2011.12.045)

20. Cohen Y, Avram L, Evan-Salem T, Slovak S, Shemesh N, Frish L. (2012) Diffusion NMR in Supramolecular Chemistry and Complexed Systems. Analytical Methods in Supramolecular Chemistry, 2nd edition Volume 1 & 2 (doi:10.1002/9783527644131.ch6)

19. Shemesh N, Özarslan E, Basser PJ, Cohen Y. (2012) Accurate noninvasive measurement of cell size and compartment shape anisotropy in yeast cells using double-pulsed field gradient MR. NMR Biomed 25 (2), 236–246 (doi:10.1002/nbm.1737)

18. Shemesh N, Westin CF, Cohen Y. (2012) Magnetic resonance imaging by synergistic diffusion-diffraction patterns. Phys Rev Lett 108 (5), 058103 (doi:10.1103/PhysRevLett.108.058103)

17. Shemesh N, Cohen Y. (2011) Overcoming apparent-Susceptibility-Induced Anisotropy (aSIA) by bipolar double-Pulsed-Field-Gradient NMR. J Magn Reson 212 (2), 362–369 (doi:10.1016/j.jmr.2011.07.015)

16. Shemesh N, Cohen Y. (2011) Microscopic and compartment shape anisotropies in gray and white matter revealed by angular bipolar double-PFG MR. Magn Reson Med 65 (5), 1216-1227 (doi:10.1002/mrm.2273)

15. Shemesh N, Adiri T, Cohen Y. (2011) Probing microscopic architecture of opaque heterogeneous systems using double-pulsed-field-gradient NMR. J Am Chem Soc 133 (15), 6028-6035 (doi:10.1021/ja200303h)

14. Özarslan E, Shemesh N, Koay CG, Cohen Y, Basser PJ. (2011) NMR characterization of general compartment size distributions. New J Phys 13, 015010 (doi:10.1088/1367-2630/13/1/015010)

13. Komlosh ME, Özarslan E, Lizak MJ, Horkay F, Schram V, Shemesh N, Cohen Y, Basser PJ. (2011) Pore diameter mapping using double pulsed-field gradient MRI and its validation using a novel glass capillary array phantom. J Magn Reson 208 (1), 128–135 (doi:10.1016/j.jmr.2010.10.014)

12. Shemesh N, Özarslan E, Komlosh ME, Basser PJ, Cohen Y. (2010) From single-pulsed field gradient to double-pulsed field gradient MR: gleaning new microstructural information and developing new forms of contrast in MRI. NMR Biomed 23 (7), 757–780 (doi:10.1002/nbm.1550)

11. Shemesh N, Özarslan E, Adiri T, Basser PJ, Cohen Y. (2010) Noninvasive bipolar double-pulsed-field-gradient NMR reveals signatures for pore size and shape in polydisperse, randomly oriented, inhomogeneous porous media. J Chem Phys 133 (4), 044705 (doi:10.1063/1.3454131)

10. Bar-Shir A, Shemesh N, Nossin-Manor R, Cohen Y. (2010) Late stimulation of the sphenopalatine‐ganglion in ischemic rats: Improvement in N‐acetyl‐aspartate levels and diffusion weighted imaging characteristics as seen by MR. J Magn Reson Imaging 31 (6), 1355–1363 (doi:10.1002/jmri.22110)

9. Shemesh N*, Sadan O*, Melamed E, Offen D, Cohen Y. (2010) Longitudinal MRI and MRSI characterization of the quinolinic acid rat model for excitotoxicity: peculiar apparent diffusion coefficients and recovery of N-acetyl aspartate levels. NMR Biomed 23 (2), 196–206 (doi:10.1002/nbm.1443)

8. Shemesh N, Özarslan E, Basser PJ, Cohen Y. (2010) Detecting diffusion-diffraction patterns in size distribution phantoms using double-pulsed field gradient NMR: Theory and experiments. J Chem Phys 132 (3), 034703 (doi:10.1063/1.3285299)

7. Sadan O, Bahat-Stromza M, Barhum Y, Levy YS, Pisnevsky A, Peretz H, Ilan AB, Bulvik S, Shemesh N, Krepel D, Cohen Y, Melamed E, Offen D. (2009) Protective Effects of Neurotrophic Factor–Secreting Cells in a 6-OHDA Rat Model of Parkinson Disease. Stem Cells Dev 18 (8), 1179-1190 (doi:10.1089/scd.2008.0411)

6. Shemesh N, Özarslan E, Bar-Shir A, Basser PJ, Cohen Y. (2009) Observation of restricted diffusion in the presence of a freely diffusing compartment: single- and double-PFG experiments. J Magn Reson 200 (2), 214–225 (doi:10.1016/j.jmr.2009.07.005)

5. Shemesh N, Özarslan E, Basser PJ, Cohen Y. (2009) Measuring small compartmental dimensions with low-q angular double PGSE NMR: The effect of experimental parameters on signal decay. J Magn Reson 198 (1), 15-23 (doi:10.1016/j.jmr.2009.01.004)

4. Sadan O*, Shemesh N*, Cohen Y, Melamed E, Offen D. (2009) Adult neurotrophic factor-secreting stem cells: a potential novel therapy for neurodegenerative diseases. Isr Med Assoc J 11 (4), 201-204

3. Özarslan E, Shemesh N, Basser PJ. (2009) A general framework to quantify the effect of restricted diffusion on the NMR signal with applications to double pulsed field gradient NMR experiments. J Chem Phys 130 (10), 104702 (doi:10.1063/1.3082078)

2. Shemesh N, Cohen Y. (2008) The effect of experimental parameters on the signal decay in double-PGSE experiments: negative diffractions and enhancement of structural information. J Magn Reson 195 (2), 153-161 (doi:10.1016/j.jmr.2008.09.006)

1. Sadan O, Shemesh N, Barzilay R, Bahat-Stromza M, Melamed E, Cohen Y, Offen D. (2008) Migration of neurotrophic factors-secreting mesenchymal stem cells toward a quinolinic acid lesion as viewed by magnetic resonance imaging. Stem Cells 26 (10), 2542–2551 (doi:10.1634/stemcells.2008-0240)